EU Laboratory Capability Monitoring System (EULabCap): Report on 2014 survey of EU/EEA country capabilities and capacities
The ECDC public health microbiology strategy (2012–2016) aims to strengthen the capability and capacity of the EU public health microbiology system to provide the timely and reliable information that underpins infectious threat detection, assessment and surveillance at Member State and EU level to prevent and control infectious diseases. To ascertain how well this is delivered, ECDC has developed and piloted a system (EULabCap) for monitoring key public health microbiology capabilities and capacity for EU surveillance and epidemic preparedness on an annual basis.
This report for 2014, which presents the indicator results for 30 EU and EEA (European Economic Area) countries, aims to help policymakers identify possible areas for action and to evaluate the impact of capacity strengthening activities and health system reforms.
The results of the EU Laboratory Capability Monitoring System (EULabCap) survey on 2014 data confirms that the EU/EEA as a whole can rely on a strong public health microbiology system and substantial capacity to fulfil surveillance and response requirements. This second EULabCap report presents the results of the 2014 data and a comparison with the baseline of the first survey on 2013 data for 30 EU/EEA countries.
There are still substantial differences in EULabCap indices between the EU/EEA countries but many countries have showed early indications of an improved system capability and capacity in 2014 compared to the previous year. In particular, there is a clear progress in the monitoring of antimicrobial resistance and support of national reference laboratories in outbreak response. Another notable development is that eight EU/EEA countries have started in 2014 to use whole genome sequencing (WGS)-based typing for the routine surveillance of at least one disease. This technology shift is in line with the ECDC strategy on use of WGS for public health applications. ECDC is supporting the Member States in the transition to WGS from earlier typing technologies to enhance national and EU-level surveillance.
In the EULabCap 2013 survey, there were limited requirements for accreditation and licencing of clinical microbiology laboratories, which are processes to ensure the reliability of results in diagnosis and treatment of patients. Progress was noted in the 2014 survey with more countries requiring a licencing authorisation/registration of their laboratories. However, gaps remained in biosafety regulation and oversight which reinforce laboratory containment of infectious microorganisms and hazardous biological materials.
Laboratory capacity and capability
The primary goal of the EU Laboratory Capability Monitoring System is to assess the capacity and capability of microbiology laboratories at national and EU level.Read more
Expert opinion on whole genome sequencing for public health surveillance
15 Aug 2016 - This document sets out ECDC's five year vision for using whole genome sequencing (WGS) technology within the context of its agreed strategy and roadmap for integrating typing data into EU level surveillance and cross-border outbreak assessment.
ECDC roadmap for integration of molecular typing and genomic typing into European-level surveillance and epidemic preparedness – Version 2.1, 2016-19
10 Aug 2016 - This roadmap Version 2.1, 2016–19 presents the recommended priority list of pathogens/diseases and technical implementation options for the medium-term integration of molecular/genomic typing into EU-level surveillance and epidemic preparedness.