Eleventh external quality assessment scheme for Salmonella typing
This report presents the results of the 11th round of the external quality assessment (EQA-11) scheme for typing of Salmonella enterica subsp. enterica organised for the national public health national reference laboratories (NPHRLs) in ECDC’s Food- and Waterborne Diseases and Zoonoses network (FWD-Net) managed by the European Centre for Disease Prevention and Control (ECDC). The EQA-11 scheme was arranged by the Section for Foodborne Infections at the Statens Serum Institut (SSI) in Denmark.
Joint ECDC, EFSA and EURL Lm report: European Listeria typing exercise (ELiTE)
This report presents the objectives, methods, results, and conclusions of a collaborative study called the 'European Listeria Typing Exercise’ (ELiTE), as well as recommendations for further studies.
Pioneering project describes molecular epidemiology of listeriosis in humans and Listeria monocytogenes in food
A collaborative study between ECDC, the European Food Safety Authority (EFSA) and the European Union Reference Laboratory (EURL) for Listeria monocytogenes* found a relatively high degree of dissemination of certain listeriosis bacteria in the food chain and in the human population across the European Union (EU).
Sequencing of SARS-CoV-2 - first update
This technical guidance aims to provide guidelines to laboratories and relevant stakeholders in the European Union (EU), European Economic Area (EEA) and other countries in the WHO European region in making decisions on establishing sequencing capacities and capabilities, in making decisions on which technologies to use and/or in deciding on the role of sequencing for SARS-CoV-2 diagnostics, research, outbreak investigations and surveillance.
Drug-resistant tuberculosis in eastern Europe and central Asia: a time-series analysis of routine surveillance data
Dadu A, Hovhannesyan A, Ahmedov S, van der Werf MJ, Dara M.
Public Health Genomics – an introduction
This workshop is designed to strengthen the capacity to use whole genome sequencing of human pathogens for public health investigations in EU/ EEA Member States.
Collection and analysis of whole genome sequencing data from food-borne pathogens and other relevant microorganisms isolated from human, animal, food, feed and food/feed environmental samples in the joint ECDC–EFSA molecular typing database
This report identifies and compares potential platforms/solutions for the set-up and running of a joint ECDC–EFSA database to collect and analyse whole genome sequencing (WGS) data for Listeria monocytogenes, Salmonella and Escherichia coli. In particular, WGS introduces the need for specific components for storage and analysis of these data.
Proficiency test for Listeria monocytogenes whole genome assembly 2018
This report presents the results of a proficiency test to evaluate the inter-laboratory reproducibility and portability of Listeria monocytogenes (Lm) genome assemblies in the EU/EEA.
Whole genome sequencing: new ECDC framework suggests priority diseases and implementation options
Whole genome sequencing (WGS) is a fast-moving technology, but the pace of change vary between pathogens/diseases and European Union countries. In a new report, ECDC proposes to prioritise the implementation of WGS depending on disease and public health application.