Molecular typing of Neisseria gonorrhoeae
In 2011, a pilot study was undertaken to assess the public health benefit of molecular surveillance for gonorrhoea in 21 EU/EEA countries. A total of 1 066 isolates collected under the 2010 European gonococcal antimicrobial surveillance programme were typed and 406 sequence types identified, with considerable diversity among countries.
Fourth external quality assessment scheme for Salmonella typing
This report presents the results of the 4th round of the Salmonella External Quality Assessment (EQA) scheme for typing of Salmonella enterica spp.
Sixth external quality assessment scheme for Salmonella typing
This report presents the results of the sixth round of the Salmonella External Quality Assessment (EQA) scheme for typing of Salmonella enterica spp. enterica (further EQA-6).
ECDC roadmap for integration of molecular typing into European-level surveillance and epidemic preparedness – Version 1.2, 2013
This document presents the recommended priority options and implementation processes for the medium-term integration of molecular typing into EU-level surveillance and epidemic preparedness.
ECDC roadmap for integration of molecular typing and genomic typing into European-level surveillance and epidemic preparedness – Version 2.1, 2016-19
This roadmap Version 2.1, 2016–19 presents the recommended priority list of pathogens/diseases and technical implementation options for the medium-term integration of molecular/genomic typing into EU-level surveillance and epidemic preparedness.
Gonococcal antimicrobial susceptibility surveillance in Europe, 2014
The surveillance of Neisseria gonorrhoeae antimicrobial susceptibility in the European Union/European Economic Area (EU/EEA) has been co-ordinated by the European Centre for Disease Prevention and Control (ECDC) since 2009.
Antimicrobial resistance surveillance in Europe 2015
This report presents antimicrobial resistance data for seven microorganisms of major public health importance. For 2015, data were reported by 29 countries. The report also presents trend analyses for the period 2012–2015.
Molecular typing of Neisseria gonorrhoeae – a study of 2013 isolates
This report describes the second molecular typing survey of N. gonorrhoeae across the EU/EEA and provides recent information on NG-MAST STs/Gs and genotypes based on WGS circulating in 21 EU/EEA Member States.
Strategy for the external quality assessment of public health microbiology laboratories
ECDC’s Microbiology Coordination Section developed a multi-disease ECDC’s strategy for cost-efficient design and management of ECDC EQAs.
Monitoring the use of whole-genome sequencing in infectious disease surveillance in Europe 2015–2017
The results of the third pan-EU/EEA survey presented in this report showed that by mid-2017 the vast majority of national public health reference laboratories in EU/EEA countries had access to whole genome sequencing based typing of diverse microbial pathogens for investigations of infection and drug resistance transmission.