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  • Remove this filter Infectious disease: Food- and waterborne diseases
  • Remove this filter Tag: EU/EEA
  • Remove this filter Public health area: Microbiology
  • Remove this filter Public health area: Whole genome sequencing
  • Infectious disease
    • Food- and waterborne diseases (6)
    • Zoonosis (5)
    • Salmonellosis (3)
    • Listeriosis (2)
  • Public health area
    • Microbiology (6)
    • Whole genome sequencing (6)
    • Molecular typing (4)
    • Public health threat (3)
    • Outbreak (3)
    • Threats and outbreaks (3)
    • Epidemic (1)
    • Epidemic intelligence (1)
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      • EU/EEA (6)
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    • Publication (6)
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Publication

Joint Rapid Outbreak Assessment: Multi-country outbreak of Salmonella Agona infections linked to infant formula

Risk assessment - 17 Jan 2018

This document provides an assessment of the public health risk associated with a multi-country outbreak of Salmonella Agona associated with consumption of potentially contaminated infant formula from France.

Joint Rapid Outbreak Assessment: Multi-country outbreak of Salmonella Agona infections linked to infant formula - EN - [PDF-989.15 KB]
  • France
  • Greece
  • Microbiology
  • Molecular typing
  • Public health threat
  • Salmonellosis
  • Scientific advice
  • Spain
  • Whole genome sequencing

Publication

Multi-country outbreak of Listeria monocytogenes sequence type 8 infections linked to consumption of salmon products

Risk assessment - 25 Oct 2018

A multi-country outbreak of 12 listeriosis cases caused by Listeria monocytogenes sequence type (ST) 8 has been identified through whole genome sequencing (WGS) analysis in three EU/EEA countries: Denmark (6 cases), Germany (5) and France (1).

Multi-country outbreak of Listeria monocytogenes sequence type 8 infections linked to consumption of salmon products - EN - [PDF-923.17 KB]
  • Denmark
  • EU/EEA
  • France
  • Germany
  • Listeriosis
  • Microbiology
  • Molecular typing
  • Poland
  • Public health threat
  • Whole genome sequencing

Publication

Proficiency test for Listeria monocytogenes whole genome assembly 2018

Technical report - 16 May 2019

This report presents the results of a proficiency test to evaluate the inter-laboratory reproducibility and portability of Listeria monocytogenes (Lm) genome assemblies in the EU/EEA.

Proficiency test for Listeria monocytogenes whole genome assembly 2018 - EN - [PDF-736.16 KB]
  • EU/EEA
  • Laboratories
  • Listeriosis
  • Microbiology
  • Molecular typing
  • Whole genome sequencing

Publication

Collection and analysis of whole genome sequencing data from food-borne pathogens and other relevant microorganisms isolated from human, animal, food, feed and food/feed environmental samples in the joint ECDC–EFSA molecular typing database

Technical report - 29 May 2019

This report identifies and compares potential platforms/solutions for the set-up and running of a joint ECDC–EFSA database to collect and analyse whole genome sequencing (WGS) data for Listeria monocytogenes, Salmonella and Escherichia coli. In particular, WGS introduces the need for specific components for storage and analysis of these data.

Collection and analysis of whole genome sequencing data from food-borne pathogens and other relevant microorganisms isolated from human, animal, food, feed and food/feed environmental samples in the joint ECDC–EFSA molecular typing database - EN - [PDF-2.68 MB]
  • EU/EEA
  • Food- and waterborne diseases
  • Microbiology
  • Molecular typing
  • Whole genome sequencing

Peer-Reviewed Publication

Salmonellosis outbreak with novel Salmonella enterica subspecies enterica serotype (11:z41:e,n,z15) attributable to sesame products in five European countries, 2016 to 2017

Sep 2019 - Euro Surveill. - 24(36)

Meinen, A., Simon, S., Banerji, S., Szabo, I., Malorny, B., Borowiak, M., Hadziabdic, S., Becker, N., Luber, P., Lohr, D., Harms, C., Plenge-Bönig, A., Mellou, K., Mandilara, G., Mossong, J., Ragimbeau, C., Weicherding, P., Hau, P., Dědičová, D., Šafaříková, L., Nair, S., Dallman, T.J., Larkin, L., McCormick, J., De Pinna, E., Severi, E., Kotila, S., Niskanen, T., Rizzi, V., Deserio, D., Flieger, A., Stark, K.

  • Czech Republic
  • Epidemic
  • Epidemic intelligence
  • EU/EEA
  • France
  • Germany
  • Greece
  • Luxembourg
  • National reference laboratory
  • Reference laboratory
  • Salmonellosis
  • United Kingdom
  • Whole genome sequencing

Publication

Multi-country outbreak of Salmonella Enteritidis sequence type (ST)11 infections linked to poultry products in the EU/EEA and the United Kingdom

Risk assessment - 25 Feb 2021

Between May 2018 and December 2020, 193 human cases of Salmonella Enteritidis sequence type (ST)11 were reported in Denmark (2), Finland (4), France (33), Germany (6), Ireland (12), the Netherlands (3), Poland (5), Sweden (6), and the United Kingdom (UK) (122). One in five cases was hospitalised. One death was reported. Fifty percent of the cases were children ≤ 18 years. The most recent case was reported by the UK in December 2020.

Multi-country outbreak of Salmonella Enteritidis sequence type (ST)11 infections linked to poultry products in the EU/EEA and the United Kingdom - EN - [PDF-2.48 MB]
  • EU/EEA
  • Microbiology
  • Public health threat
  • Salmonellosis
  • Whole genome sequencing
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